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  • examples
    • queueing theory
    • Yang 2014 Molecular Evolution
    • HKY paralog analysis
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examplesΒΆ

  • queueing theory
    • log likelihood
    • prior summaries
    • EM estimation
    • a simple multivariate process
    • derivatives
    • conditional summaries
    • dwell time plot
    • vanishing edge rates
    • marca doc NCD
  • Yang 2014 Molecular Evolution
    • table 4.3 JC69
    • table 4.3 K80
    • example 4.1
    • section 4.2.4 poisson amino acid model
    • section 4.2.4 MTMAM
    • section 4.4.2.1 marginal reconstruction
  • HKY paralog analysis
    • primate HKY+geneconv with tau=0
    • yeast HKY+geneconv with tau=0
    • HKY+IGC free tau
    • edge-specific posterior estimates
    • PAML primate HKY85
  • uncategorized
    • table 1 by Minin and Suchard
    • tolerance switching process
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