Yang 2014 Molecular Evolution

This section includes implementations of examples (but not problem sets) from Molecular Evolution: A Statistical Approach by Ziheng Yang, 2014, Oxford University Press.

• table 4.3 JC69
• table 4.3 K80
• example 4.1
• section 4.2.4 poisson amino acid model
• section 4.2.4 MTMAM
• section 4.4.2.1 marginal reconstruction